Package: PolyHaplotyper 1.0.1
PolyHaplotyper: Assignment of Haplotypes Based on SNP Dosages in Diploids and Polyploids
Infer the genetic composition of individuals in terms of haplotype dosages for a haploblock, based on bi-allelic marker dosages, for any ploidy level. Reference: Voorrips and Tumino: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data. Submitted to BMC Bioinformatics (2021).
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PolyHaplotyper_1.0.1.tar.gz
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PolyHaplotyper.pdf |PolyHaplotyper.html✨
PolyHaplotyper/json (API)
# Install 'PolyHaplotyper' in R: |
install.packages('PolyHaplotyper', repos = c('https://roelandv.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:c733cbb692. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 17 2024 |
R-4.5-win | OK | Aug 17 2024 |
R-4.5-linux | OK | Aug 17 2024 |
R-4.4-win | OK | Aug 17 2024 |
R-4.4-mac | OK | Aug 17 2024 |
R-4.3-win | OK | Aug 17 2024 |
R-4.3-mac | OK | Aug 17 2024 |
Exports:allhapallHaplotypesbuild_ahccompletelistcalcMrkHaptablecalcStatisticscheckmrkDosagecompareHapMrkDosagescompareHapresultsexpandHapdosgetFSfreqsgetGameteFreqshapcomb2hapdoshapdos2hapcombhapdos2mrkdoshaploblock_df2listinferHaplotypesmake.Happyinf.inputmake.SATlotyper.inputmake.ShesisPlus.inputmergeReplicatesmrkdid2mrkdosmrkdos2mrkdidoverviewByFSpaddedpedigreeHapCheckpedigreeSim2PHread.Happyinf.outputread.SATlotyper.outputread.ShesisPlus.outputrun.SATlotypershowOneFStotHapcombCountusedhap
Dependencies:XML